The Talmud, for example in tractate Chagiga 13a states that the Rabbis had an inclination to ban the book of Yechezkel/Ezekiel from the Bible, because there were statements in that Biblical Book that seemed at first glance to contradict the Torah of Moshe/Moses.
However, because Chananiah the son of Chizkia, may he be remembered for good, devoted an extremely large amount of time studying Yechezkel and found ways to interpret the book, so that it would not contradict the Torah, so the Rabbis decided to keep Yechezkel in the Tanakh/Bible.
Rashi in his commentary on the page, says that the initial opposition was that there were things at the end of the book of Yechezkek, regarding sacrifices that contradicted what is written in the Torah.
As I said earlier, Chananiah the son of Chizkia, was able to find a satisfactory solution to the apparent contradictions, so the book was kept in.
I remember elsewhere other "problems" with the book of Yechezkel outside the issue of sacrifices, that were brought up by the Rabbis, but since those other sources aren't in front of me right now, I will make due with what I have written.