My suggestions:
1) Catchy and menacing splash intro screen that sets the right tone and warns about the danger of islam and the hope that JTF represents.
2) Tabular design, fairly shallow as far as navigation (2-3 level), website created in Flash/HTML. We should not have a lot of text on the first screen - text should be in well defined, well separated frames and accompanied by graphic.
3) Ideally, the main page should be updated every day, and become a source of real news and commentaries. If this is too expensive or time consuming, perhaps Chaim's blog page? This would give a much more personal feel to it.
4) We need a clear, well-defined Positioning Statement - who we are, what unites us
5) JTF Positions tab - what is JTF take on various topics, from muslim "moderates", non-existent "Palestine", to US election, to myths about Khazars, Israel, lies about Talmud, Rabbi Kahane, Serbia/Kosovo, Georgia, self-hating Jews, Satmars/Neturei Karta, etc, etc.. It would be great if, for example
6) Video tab -contains archived videos sorted by topic
7) Audio tab - contained mp3 files - Ask JTF show, interviews, etc.
Articles tab - sorted by topics. For example - Black Culture is linked to the great and informative series of the "Truth about Black Africa", Malcom X, etc.